PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676766190
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family DBB
Protein Properties Length: 293aa    MW: 32230.8 Da    PI: 6.4351
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676766190genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box192.9e-06447542
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                C+ +e  e+   C  ++  lC  C ++ H        H++vpl
  676766190  4 QCNVCEAAEAAVLCCADEAALCWACDEKVHAAnklagkHQRVPL 47
               7******99*********************66899999999986 PP
2zf-B_box25.92e-085490337
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                +kC+ ++e    +fC +++ llC++C +++H+   H
  676766190 54 IPKCDICQEASGFFFCLQDRALLCRKCDVAIHSVnpH 90
               689*******9********************943563 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.381147IPR000315B-box-type zinc finger
CDDcd000211.54E-7347No hitNo description
SMARTSM003364.7E-10447IPR000315B-box-type zinc finger
SMARTSM003362.6E-135299IPR000315B-box-type zinc finger
PROSITE profilePS501198.7595299IPR000315B-box-type zinc finger
CDDcd000212.71E-85599No hitNo description
PfamPF006431.1E-65593IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKIQCNVCEA AEAAVLCCAD EAALCWACDE KVHAANKLAG KHQRVPLTVS SSSIPKCDIC  60
QEASGFFFCL QDRALLCRKC DVAIHSVNPH VSAHQRFLLT GIRVGLESTD SGPSTKSSPS  120
NDDKTNETKQ FTLPTSEPQK MDFDHHHHQV LLPETKVSDH ISTKLPFASS GSAAGSIPQW  180
QIEEIFGLTD FDQSYEYMEN NGSSKADTCR RGDSDTSSMM RSGEEDGEDN NNCLGGETSW  240
AVPQIHSPPT ASGLNWPKHF NQHSVFVPDI SSSTPYTGSS PNQRVVKRRR RRF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283288RVVKRR
2286291KRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526340.0AK352634.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591601.10.0PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM21e-176BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A0D3D1M00.0A0A0D3D1M0_BRAOL; Uncharacterized protein
STRINGfgenesh2_kg.2__2154__AT1G78600.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-154light-regulated zinc finger protein 1